Download Toolbox
The Systems Biology Toolbox has been developed as a suit of MATLAB scripts that are provided in a zip-file that can be downloaded below. For different purposes additional, freely available, third party software, mentioned below, might be downloaded and installed.For information on how to install the toolbox and the additional software, please read the information on the installation page.
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This toolbox is free software; you can redistribute it and/or
modify it under the terms of the GNU General Public License
as published by the Free Software Foundation; either version 2
of the License, or (at your option) any later version.
This toolbox is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. |
| Package | Description | Download |
|---|---|---|
| Systems Biology Toolbox for MATLAB | zip-file containing the MATLAB scripts of the toolbox. | Download Toolbox |
| SBML Toolbox | For the import/export of SBML models to MATLAB the functions
TranslateSBML/OutputSBML are used. These functions are
available in the SBMLToolbox. Please use always the newest version of the SBML Toolbox. |
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| XPPAUT | In order to enable the toolbox to perform bifurcation analysis the XPPAUT program needs to be installed. This program can be found here. | |
| Stochastic Simulation | The toolbox is enabled to perform stochastic simulation of systems containing only mass action kinetics.
In order to run stochastic simulations a simulator needs to be downloaded from:
http://dion.che.udel.edu/multiscale/stochastic_sim.exe.
More information about the simulator can be obtained from:
http://dion.che.udel.edu/multiscale/software.html. Please note that the simulator is only available for Windows platforms.. |
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